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Knowledge BaseTroubleshooting Atlas › Digital pathology

Scan failures on faint or thick sections

Also known as: scan issues, scanning errors

What it looks like

Sections may appear underexposed or overly dense in scanned images. Details may be obscured or lost in the scanning process.

Where it usually appears: Commonly seen with poorly prepared sections that are either too thin or too thick, particularly in histological samples.

Likely causes
  • Inadequate sectioning technique
  • Incorrect scanner settings
  • Poor staining quality
  • Inconsistent sample thickness
  • Improper mounting medium
Immediate checks
  • Verify section thickness
  • Inspect staining quality
  • Check scanner calibration
Corrective action
  • Adjust scanner settings
  • Re-cut sections to appropriate thickness
  • Re-stain samples if necessary
Preventive action
  • Ensure consistent sectioning technique
  • Regularly calibrate scanning equipment
  • Use appropriate mounting media
Equipment: Digital slide scannerReagent: Mounting mediumRelated SOP: Digital Pathology Scanning SOP

This atlas is for educational purposes for laboratory professionals. It does not replace your institutional SOPs, manufacturer instructions, validated protocols or pathologist judgment. Adapt any action to your laboratory and equipment.

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